1 Hpt#1
21-101 aa · 81 aa · 12.5% of protein
Raw token
Hpt:21:0.0000000000252:101:81:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS10305
Histidine kinase, CheA
Hungatella effluvii · GCF_034131825
ClassHKTypeCheALength648 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS10305Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage431 / 648 aa (66.5%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
261-334 aa · 74 aa · 11.4% of protein
Raw token
H-kinase_dim:261:0.000000247:334:74:673 HATPase_c#3
360-501 aa · 142 aa · 21.9% of protein
Raw token
HATPase_c:360:6.42e-19:501:142:1094 CheW#4
506-639 aa · 134 aa · 20.7% of protein
Raw token
CheW:506:1.6e-16:639:136:138- Raw architecture: Hpt:21:0.0000000000252:101:81:84#H-kinase_dim:261:0.000000247:334:74:67#HATPase_c:360:6.42e-19:501:142:109#CheW:506:1.6e-16:639:136:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000222.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18845-21735Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000222.1::G00055Context members
U0F24_RS10305U0F24_RS10310
Partner locus tags
U0F24_RS10305U0F24_RS10310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS10305Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000222.1Sequence record reported by the local genomic context database.
Genomic interval18 845-20 791 nt1 947 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 845-21 735 ntGCF_034131825::NZ_JAWYIA010000222.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000222.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000222.1All displayed genes belong to this local TCS context.
Neighborhood span18 845-21 735 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 845 nt21 735 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS10305GCF_034131825#U0F24_RS10305
HKCheACurrent focus
18 845-20 791 nt · Reverse (-)
U0F24_RS10310GCF_034131825#U0F24_RS10310
RRPleD
20 797-21 735 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS10305The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0902485
Simplified PFAM architecture for HKOC_0902485
PFAM domain coverage: 484 / 648 aa (74.7%)
1 aa648 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[11-96] | P2[144-220] | H-kinase_dim[260-310] | HATPase_c[364-501] | CheW[508-639]
- Domain count: 5
- Matched identifier: HKOC_0902485
- Positioned domains: Hpt 11-96 ; P2 144-220 ; H-kinase_dim 260-310 ; HATPase_c 364-501 ; CheW 508-639
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS10305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key