1 Response_reg#1
4-117 aa · 114 aa · 20.2% of protein
Raw token
Response_reg:4:8.35e-23:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS05160
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength564 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS05160Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length564 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 564 aa (27.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa564 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
470-511 aa · 42 aa · 7.4% of protein
Raw token
HTH_AraC:470:0.000000000069:511:42:42- Raw architecture: Response_reg:4:8.35e-23:117:114:111#HTH_AraC:470:0.000000000069:511:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000107.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8924-11471Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000107.1::G00029Context members
U0F24_RS05155U0F24_RS05160
Partner locus tags
U0F24_RS05155U0F24_RS05160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002601897.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS05160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000107.1Sequence record reported by the local genomic context database.
Genomic interval9 777-11 471 nt1 695 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 924-11 471 ntGCF_034131825::NZ_JAWYIA010000107.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000107.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000107.1All displayed genes belong to this local TCS context.
Neighborhood span8 924-11 471 nt2 548 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 924 nt11 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS05155GCF_034131825#U0F24_RS05155
HKClassic
8 924-9 760 nt · Reverse (-)
U0F24_RS05160GCF_034131825#U0F24_RS05160
RRunclassifiedCurrent focus
9 777-11 471 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS10490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0056687
Simplified PFAM architecture for RROC_0056687
PFAM domain coverage: 191 / 564 aa (33.9%)
1 aa564 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[484-561]
- Domain count: 2
- Matched identifier: RROC_0056687
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 484-561 ; HTH_18 484-561
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS10490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key