1 Response_reg#1
4-117 aa · 114 aa · 56.4% of protein
Raw token
Response_reg:4:3.05e-33:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS04630
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength202 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS04630Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 202 aa (56.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.05e-33:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000100.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14471-16921Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000100.1::G00028Context members
U0F24_RS04625U0F24_RS04630
Partner locus tags
U0F24_RS04625U0F24_RS04630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015780.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS04630Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000100.1Sequence record reported by the local genomic context database.
Genomic interval16 314-16 921 nt608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 471-16 921 ntGCF_034131825::NZ_JAWYIA010000100.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000100.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000100.1All displayed genes belong to this local TCS context.
Neighborhood span14 471-16 921 nt2 451 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 471 nt16 921 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS04625GCF_034131825#U0F24_RS04625
HKClassic
14 471-16 342 nt · Forward (+)
U0F24_RS04630GCF_034131825#U0F24_RS04630
RRunclassifiedCurrent focus
16 314-16 921 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS08295Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113972
Simplified PFAM architecture for RROC_0113972
PFAM domain coverage: 190 / 529 aa (35.9%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[449-525]
- Domain count: 2
- Matched identifier: RROC_0113972
- Positioned domains: Response_reg 4-116 ; HTH_18 449-525
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS08295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key