1 dCache_1#1
44-289 aa · 246 aa · 39.5% of protein
Raw token
dCache_1:44:0.000000000671:289:246:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS04625
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength623 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS04625Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length623 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage500 / 623 aa (80.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa623 aa
Domain-by-domain annotation4 items
2 HAMP#2
307-375 aa · 69 aa · 11.1% of protein
Raw token
HAMP:307:0.00000000895:375:69:693 His_kinase#3
404-480 aa · 77 aa · 12.4% of protein
Raw token
His_kinase:404:1.22e-33:480:77:804 HATPase_c#4
499-606 aa · 108 aa · 17.3% of protein
Raw token
HATPase_c:499:0.0000000000000228:606:110:109- Raw architecture: dCache_1:44:0.000000000671:289:246:195#HAMP:307:0.00000000895:375:69:69#His_kinase:404:1.22e-33:480:77:80#HATPase_c:499:0.0000000000000228:606:110:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000100.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14471-16921Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000100.1::G00028Context members
U0F24_RS04625U0F24_RS04630
Partner locus tags
U0F24_RS04625U0F24_RS04630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008379.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS04625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000100.1Sequence record reported by the local genomic context database.
Genomic interval14 471-16 342 nt1 872 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 471-16 921 ntGCF_034131825::NZ_JAWYIA010000100.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000100.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000100.1All displayed genes belong to this local TCS context.
Neighborhood span14 471-16 921 nt2 451 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 471 nt16 921 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS04625GCF_034131825#U0F24_RS04625
HKClassicCurrent focus
14 471-16 342 nt · Forward (+)
U0F24_RS04630GCF_034131825#U0F24_RS04630
RRunclassified
16 314-16 921 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS04625The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0965993
Simplified PFAM architecture for HKOC_0965993
PFAM domain coverage: 226 / 623 aa (36.3%)
1 aa623 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[331-371] | His_kinase[404-481] | HATPase_c[500-606]
- Domain count: 3
- Matched identifier: HKOC_0965993
- Positioned domains: HAMP 331-371 ; His_kinase 404-481 ; HATPase_c 500-606
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS04625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key