1 Response_reg#1
4-114 aa · 111 aa · 25.2% of protein
Raw token
Response_reg:4:2.54e-26:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS04355
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength441 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034131825#U0F24_RS04355Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 441 aa (34.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
402-441 aa · 40 aa · 9.1% of protein
Raw token
HTH_AraC:402:0.00000001:441:40:42- Raw architecture: Response_reg:4:2.54e-26:114:111:111#HTH_AraC:402:0.00000001:441:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034131825::NZ_JAWYIA010000095.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-1323Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000095.1::G00027Context members
U0F24_RS04355
Partner locus tags
U0F24_RS04355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015765.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS04355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000095.1Sequence record reported by the local genomic context database.
Genomic interval1-1 323 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 323 ntGCF_034131825::NZ_JAWYIA010000095.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000095.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000095.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 323 nt1 323 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 323 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0F24_RS04355GCF_034131825#U0F24_RS04355
RRunclassifiedCurrent focus
1-1 323 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS19010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0164133
Simplified PFAM architecture for RROC_0164133
PFAM domain coverage: 189 / 495 aa (38.2%)
1 aa495 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[415-491]
- Domain count: 2
- Matched identifier: RROC_0164133
- Positioned domains: Response_reg 4-115 ; HTH_18 415-491
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS19010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key