1 dCache_1#1
171-269 aa · 99 aa · 16.7% of protein
Raw token
dCache_1:171:0.0000000334:269:106:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS04175
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS04175Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage350 / 592 aa (59.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation4 items
2 HAMP#2
290-359 aa · 70 aa · 11.8% of protein
Raw token
HAMP:290:0.00000347:359:70:693 His_kinase#3
375-449 aa · 75 aa · 12.7% of protein
Raw token
His_kinase:375:1.1e-22:449:75:804 HATPase_c#4
471-576 aa · 106 aa · 17.9% of protein
Raw token
HATPase_c:471:0.00000000949:576:107:109- Raw architecture: dCache_1:171:0.0000000334:269:106:195#HAMP:290:0.00000347:359:70:69#His_kinase:375:1.1e-22:449:75:80#HATPase_c:471:0.00000000949:576:107:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000092.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8314-11591Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000092.1::G00026Context members
U0F24_RS04170U0F24_RS04175
Partner locus tags
U0F24_RS04170U0F24_RS04175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321009098.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS04175Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000092.1Sequence record reported by the local genomic context database.
Genomic interval9 813-11 591 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 314-11 591 ntGCF_034131825::NZ_JAWYIA010000092.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000092.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000092.1All displayed genes belong to this local TCS context.
Neighborhood span8 314-11 591 nt3 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 314 nt11 591 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS04170GCF_034131825#U0F24_RS04170
RRunclassified
8 314-9 816 nt · Reverse (-)
U0F24_RS04175GCF_034131825#U0F24_RS04175
HKClassicCurrent focus
9 813-11 591 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS04175The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1103246
Simplified PFAM architecture for HKOC_1103246
PFAM domain coverage: 182 / 592 aa (30.7%)
1 aa592 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[375-450] | HATPase_c[471-576]
- Domain count: 2
- Matched identifier: HKOC_1103246
- Positioned domains: His_kinase 375-450 ; HATPase_c 471-576
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS04175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key