1 HAMP#1
113-184 aa · 72 aa · 17.8% of protein
Raw token
HAMP:113:0.00000000000704:184:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS03390
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS03390Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 405 aa (62.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation3 items
2 His_kinase#2
200-278 aa · 79 aa · 19.5% of protein
Raw token
His_kinase:200:2.9e-25:278:79:803 HATPase_c#3
298-397 aa · 100 aa · 24.7% of protein
Raw token
HATPase_c:298:0.0000000607:397:105:109- Raw architecture: HAMP:113:0.00000000000704:184:72:69#His_kinase:200:2.9e-25:278:79:80#HATPase_c:298:0.0000000607:397:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000074.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29286-32101Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000074.1::G00019Context members
U0F24_RS03385U0F24_RS03390
Partner locus tags
U0F24_RS03385U0F24_RS03390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015715.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS03390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000074.1Sequence record reported by the local genomic context database.
Genomic interval30 884-32 101 nt1 218 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 286-32 101 ntGCF_034131825::NZ_JAWYIA010000074.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000074.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000074.1All displayed genes belong to this local TCS context.
Neighborhood span29 286-32 101 nt2 816 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 286 nt32 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS03385GCF_034131825#U0F24_RS03385
RRunclassified
29 286-30 869 nt · Reverse (-)
U0F24_RS03390GCF_034131825#U0F24_RS03390
HKClassicCurrent focus
30 884-32 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS03390The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2402572
Simplified PFAM architecture for HKOC_2402572
PFAM domain coverage: 231 / 405 aa (57.0%)
1 aa405 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[132-183] | His_kinase[200-275] | HATPase_c[297-399]
- Domain count: 3
- Matched identifier: HKOC_2402572
- Positioned domains: HAMP 132-183 ; His_kinase 200-275 ; HATPase_c 297-399
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS03390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key