1 HAMP#1
328-397 aa · 70 aa · 11.5% of protein
Raw token
HAMP:328:0.000000757:397:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS02315
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS02315Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 607 aa (40.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation3 items
2 His_kinase#2
413-491 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:413:1.31e-28:491:79:803 HATPase_c#3
511-606 aa · 96 aa · 15.8% of protein
Raw token
HATPase_c:511:0.00000000000503:606:105:109- Raw architecture: HAMP:328:0.000000757:397:70:69#His_kinase:413:1.31e-28:491:79:80#HATPase_c:511:0.00000000000503:606:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000052.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12125-15523Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000052.1::G00017Context members
U0F24_RS02315U0F24_RS02320
Partner locus tags
U0F24_RS02315U0F24_RS02320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600921.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DS25Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DS25_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS02315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000052.1Sequence record reported by the local genomic context database.
Genomic interval12 125-13 948 nt1 824 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 125-15 523 ntGCF_034131825::NZ_JAWYIA010000052.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000052.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000052.1All displayed genes belong to this local TCS context.
Neighborhood span12 125-15 523 nt3 399 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 125 nt15 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS02315GCF_034131825#U0F24_RS02315
HKClassicCurrent focus
12 125-13 948 nt · Reverse (-)
U0F24_RS02320GCF_034131825#U0F24_RS02320
RRunclassified
13 955-15 523 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS05515Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1018839
Simplified PFAM architecture for HKOC_1018839
PFAM domain coverage: 175 / 607 aa (28.8%)
1 aa607 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[413-491] | HATPase_c[511-606]
- Domain count: 2
- Matched identifier: HKOC_1018839
- Positioned domains: His_kinase 413-491 ; HATPase_c 511-606
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS05515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key