1 dCache_1#1
129-306 aa · 178 aa · 28.1% of protein
Raw token
dCache_1:129:0.0000134:306:179:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS02240
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength633 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS02240Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length633 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage435 / 633 aa (68.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa633 aa
Domain-by-domain annotation4 items
2 HAMP#2
324-393 aa · 70 aa · 11.1% of protein
Raw token
HAMP:324:0.000000000000394:393:70:693 His_kinase#3
410-489 aa · 80 aa · 12.6% of protein
Raw token
His_kinase:410:2.26e-33:489:80:804 HATPase_c#4
510-616 aa · 107 aa · 16.9% of protein
Raw token
HATPase_c:510:0.00000000385:616:108:109- Raw architecture: dCache_1:129:0.0000134:306:179:195#HAMP:324:0.000000000000394:393:70:69#His_kinase:410:2.26e-33:489:80:80#HATPase_c:510:0.00000000385:616:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000050.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10338-13864Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000050.1::G00016Context members
U0F24_RS02235U0F24_RS02240
Partner locus tags
U0F24_RS02235U0F24_RS02240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015653.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS02240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000050.1Sequence record reported by the local genomic context database.
Genomic interval11 963-13 864 nt1 902 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 338-13 864 ntGCF_034131825::NZ_JAWYIA010000050.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000050.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000050.1All displayed genes belong to this local TCS context.
Neighborhood span10 338-13 864 nt3 527 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 338 nt13 864 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS02235GCF_034131825#U0F24_RS02235
RRunclassified
10 338-11 966 nt · Reverse (-)
U0F24_RS02240GCF_034131825#U0F24_RS02240
HKClassicCurrent focus
11 963-13 864 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS02240The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0941593
Simplified PFAM architecture for HKOC_0941593
PFAM domain coverage: 236 / 633 aa (37.3%)
1 aa633 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[344-394] | His_kinase[411-487] | HATPase_c[510-617]
- Domain count: 3
- Matched identifier: HKOC_0941593
- Positioned domains: HAMP 344-394 ; His_kinase 411-487 ; HATPase_c 510-617
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS02240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key