1 HAMP#1
193-257 aa · 65 aa · 13.3% of protein
Raw token
HAMP:193:0.0000581:257:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS02010
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034131825#U0F24_RS02010Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 488 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-326 aa · 66 aa · 13.5% of protein
Raw token
HisKA:261:0.000000000000404:326:66:643 HATPase_c#3
375-485 aa · 111 aa · 22.7% of protein
Raw token
HATPase_c:375:4.62e-32:485:111:109- Raw architecture: HAMP:193:0.0000581:257:65:69#HisKA:261:0.000000000000404:326:66:64#HATPase_c:375:4.62e-32:485:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034131825::NZ_JAWYIA010000041.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6799-8244Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000041.1::G00015Context members
U0F24_RS02010
Partner locus tags
U0F24_RS02010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015637.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS02010Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000041.1Sequence record reported by the local genomic context database.
Genomic interval6 799-8 244 nt1 446 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 799-8 244 ntGCF_034131825::NZ_JAWYIA010000041.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000041.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000041.1All displayed genes belong to this local TCS context.
Neighborhood span6 799-8 244 nt1 446 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 799 nt8 244 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0F24_RS02010GCF_034131825#U0F24_RS02010
HKClassicCurrent focus
6 799-8 244 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS02010The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1555410
Simplified PFAM architecture for HKOC_1555410
PFAM domain coverage: 176 / 488 aa (36.1%)
1 aa488 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[262-326] | HATPase_c[375-485]
- Domain count: 2
- Matched identifier: HKOC_1555410
- Positioned domains: HisKA 262-326 ; HATPase_c 375-485
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS02010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key