1 PAS_3#1
255-317 aa · 63 aa · 7.2% of protein
Raw token
PAS_3:255:0.00000729:317:64:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS01625
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034131825
ClassHKTypeHybridLength876 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034131825#U0F24_RS01625Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length876 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage362 / 876 aa (41.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa876 aa
Domain-by-domain annotation4 items
2 HisKA#2
492-558 aa · 67 aa · 7.6% of protein
Raw token
HisKA:492:9.89e-16:558:67:643 HATPase_c#3
605-719 aa · 115 aa · 13.1% of protein
Raw token
HATPase_c:605:7.71e-30:719:116:1094 Response_reg#4
755-871 aa · 117 aa · 13.4% of protein
Raw token
Response_reg:755:7.09e-32:871:117:111- Raw architecture: PAS_3:255:0.00000729:317:64:89#HisKA:492:9.89e-16:558:67:64#HATPase_c:605:7.71e-30:719:116:109#Response_reg:755:7.09e-32:871:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034131825::NZ_JAWYIA010000035.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6021-8653Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000035.1::G00013Context members
U0F24_RS01625
Partner locus tags
U0F24_RS01625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015616.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS01625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000035.1Sequence record reported by the local genomic context database.
Genomic interval6 021-8 653 nt2 633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 021-8 653 ntGCF_034131825::NZ_JAWYIA010000035.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000035.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000035.1All displayed genes belong to this local TCS context.
Neighborhood span6 021-8 653 nt2 633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 021 nt8 653 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0F24_RS01625GCF_034131825#U0F24_RS01625
HKHybridCurrent focus
6 021-8 653 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS01625The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0452742
Simplified PFAM architecture for HKOC_0452742
PFAM domain coverage: 299 / 876 aa (34.1%)
1 aa876 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[492-558] | HATPase_c[605-720] | Response_reg[755-870]
- Domain count: 3
- Matched identifier: HKOC_0452742
- Positioned domains: HisKA 492-558 ; HATPase_c 605-720 ; Response_reg 755-870
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS01625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key