1 Response_reg#1
9-118 aa · 110 aa · 20.4% of protein
Raw token
Response_reg:9:6.81e-31:118:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS01555
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength538 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034131825#U0F24_RS01555Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 538 aa (34.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-479 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:438:0.0000366:479:42:423 HTH_AraC#3
493-528 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:493:0.00000000245:528:36:42- Raw architecture: Response_reg:9:6.81e-31:118:110:111#HTH_AraC:438:0.0000366:479:42:42#HTH_AraC:493:0.00000000245:528:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034131825::NZ_JAWYIA010000033.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span100-1716Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000033.1::G00012Context members
U0F24_RS01555
Partner locus tags
U0F24_RS01555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601346.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P9K1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P9K1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS01555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000033.1Sequence record reported by the local genomic context database.
Genomic interval100-1 716 nt1 617 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100-1 716 ntGCF_034131825::NZ_JAWYIA010000033.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000033.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000033.1All displayed genes belong to this local TCS context.
Neighborhood span100-1 716 nt1 617 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 nt1 716 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0F24_RS01555GCF_034131825#U0F24_RS01555
RRunclassifiedCurrent focus
100-1 716 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS07660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0094121
Simplified PFAM architecture for RROC_0094121
PFAM domain coverage: 191 / 538 aa (35.5%)
1 aa538 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[9-121] | HTH_18[453-530]
- Domain count: 2
- Matched identifier: RROC_0094121
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; HTH_18 453-530 ; HTH_18 453-530
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS07660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key