1 His_kinase#1
326-407 aa · 82 aa · 15.4% of protein
Raw token
His_kinase:326:1.96e-30:407:82:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS01405
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS01405Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 534 aa (35.2%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
426-531 aa · 106 aa · 19.9% of protein
Raw token
HATPase_c:426:0.000000000000017:531:108:109- Raw architecture: His_kinase:326:1.96e-30:407:82:80#HATPase_c:426:0.000000000000017:531:108:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000030.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span281-2822Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000030.1::G00010Context members
U0F24_RS01395U0F24_RS01405
Partner locus tags
U0F24_RS01395U0F24_RS01405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015602.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS01405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000030.1Sequence record reported by the local genomic context database.
Genomic interval1 216-2 822 nt1 607 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span281-2 822 ntGCF_034131825::NZ_JAWYIA010000030.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000030.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000030.1All displayed genes belong to this local TCS context.
Neighborhood span281-2 822 nt2 542 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
281 nt2 822 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS01395GCF_034131825#U0F24_RS01395
RRunclassified
281-1 015 nt · Forward (+)
U0F24_RS01405GCF_034131825#U0F24_RS01405
HKClassicCurrent focus
1 216-2 822 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034143205#U0E70_RS21380Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1003461
Simplified PFAM architecture for HKOC_1003461
PFAM domain coverage: 187 / 611 aa (30.6%)
1 aa611 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[404-484] | HATPase_c[503-608]
- Domain count: 2
- Matched identifier: HKOC_1003461
- Positioned domains: His_kinase 404-484 ; HATPase_c 503-608
Cluster members and taxonomy
Representative gene: GCF_034143205#U0E70_RS21380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key