1 Response_reg#1
23-134 aa · 112 aa · 21.0% of protein
Raw token
Response_reg:23:5.23e-34:134:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS01850
Response regulator, unclassified
Blautia faecis · GCF_032142815
ClassRRTypeunclassifiedLength533 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS01850Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length533 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 533 aa (35.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
430-469 aa · 40 aa · 7.5% of protein
Raw token
HTH_AraC:430:0.000000895:469:40:423 HTH_AraC#3
483-519 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:483:0.000000115:519:37:42- Raw architecture: Response_reg:23:5.23e-34:134:112:111#HTH_AraC:430:0.000000895:469:40:42#HTH_AraC:483:0.000000115:519:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span373148-376541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_01850RefSeq proteinWP_313717929.1
Context group ID
GCF_032142815::NZ_JAVSND010000001.1::G00004Context members
RO865_RS01850RO865_RS01855
Partner locus tags
RO865_RS01850RO865_RS01855
Partner old locus tags
RO865_01850RO865_01855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313717929.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS01850Primary locus identifier stored in the genes table.
Old locus tagRO865_01850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000001.1Sequence record reported by the local genomic context database.
Genomic interval373 148-374 749 nt1 602 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span373 148-376 541 ntGCF_032142815::NZ_JAVSND010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000001.1All displayed genes belong to this local TCS context.
Neighborhood span373 148-376 541 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
373 148 nt376 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS01850GCF_032142815#RO865_RS01850
RRunclassifiedCurrent focus
373 148-374 749 nt · Forward (+)
RO865_RS01855GCF_032142815#RO865_RS01855
HKClassic
374 640-376 541 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032142815#RO865_RS01850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107223
Simplified PFAM architecture for RROC_0107223
PFAM domain coverage: 191 / 533 aa (35.8%)
1 aa533 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[23-134] | HTH_18[441-519]
- Domain count: 2
- Matched identifier: RROC_0107223
- Positioned domains: Response_reg 23-134 ; HTH_18 441-519
Cluster members and taxonomy
Representative gene: GCF_032142815#RO865_RS01850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key