1 Response_reg#1
7-122 aa · 116 aa · 49.6% of protein
Raw token
Response_reg:7:2.23e-19:122:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS00015
Response regulator LytTR family
Blautia faecis · GCF_032142815
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032142815#RO865_RS00015Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 234 aa (88.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-230 aa · 90 aa · 38.5% of protein
Raw token
LytTR:141:4.86e-18:230:97:98- Raw architecture: Response_reg:7:2.23e-19:122:118:111#LytTR:141:4.86e-18:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032142815::NZ_JAVSND010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1311-2015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_00015RefSeq proteinWP_148463560.1
Context group ID
GCF_032142815::NZ_JAVSND010000001.1::G00001Context members
RO865_RS00015
Partner locus tags
RO865_RS00015
Partner old locus tags
RO865_00015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_148463560.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H6F0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H6F0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS00015Primary locus identifier stored in the genes table.
Old locus tagRO865_00015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 311-2 015 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 311-2 015 ntGCF_032142815::NZ_JAVSND010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 311-2 015 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 311 nt2 015 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RO865_RS00015GCF_032142815#RO865_RS00015
RRLytTRCurrent focus
1 311-2 015 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS09590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1059749
Simplified PFAM architecture for RROC_1059749
PFAM domain coverage: 202 / 234 aa (86.3%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-120] | LytTR[142-229]
- Domain count: 2
- Matched identifier: RROC_1059749
- Positioned domains: Response_reg 7-120 ; LytTR 142-229
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS09590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key