1 Response_reg#1
4-112 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:4:2.16e-23:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMX40_RS01670
Response regulator OmpR family
Clostridium paraputrificum · GCF_028210515
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210515#PMX40_RS01670Stable P2CS identifier used across views.
GenomeGCF_028210515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 222 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:146:1.7e-28:221:77:77- Raw architecture: Response_reg:4:2.16e-23:112:110:111#Trans_reg_C:146:1.7e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210515::NZ_JAQLCY010000001.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span321406-322074Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMX40_01670RefSeq proteinWP_049178684.1
Context group ID
GCF_028210515::NZ_JAQLCY010000001.1::G00013Context members
PMX40_RS01670
Partner locus tags
PMX40_RS01670
Partner old locus tags
PMX40_01670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_049178684.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2ZJ39Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2ZJ39_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMX40_RS01670Primary locus identifier stored in the genes table.
Old locus tagPMX40_01670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCY010000001.1Sequence record reported by the local genomic context database.
Genomic interval321 406-322 074 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span321 406-322 074 ntGCF_028210515::NZ_JAQLCY010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210515::NZ_JAQLCY010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span321 406-322 074 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
321 406 nt322 074 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMX40_RS01670GCF_028210515#PMX40_RS01670
RROmpRCurrent focus
321 406-322 074 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS14670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641678
Simplified PFAM architecture for RROC_1641678
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1641678
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS14670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210515
AssemblyASM2821051v1 · Scaffoldhaploid
Genome composition3 798 089 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key