1 CheW#1
15-149 aa · 135 aa · 45.0% of protein
Raw token
CheW:15:3.85e-24:149:140:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMX40_RS01640
Response regulator CheV family
Clostridium paraputrificum · GCF_028210515
ClassRRTypeCheVLength300 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210515#PMX40_RS01640Stable P2CS identifier used across views.
GenomeGCF_028210515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length300 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 300 aa (85.3%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa300 aa
Domain-by-domain annotation2 items
2 Response_reg#2
175-295 aa · 121 aa · 40.3% of protein
Raw token
Response_reg:175:2.24e-20:295:122:111- Raw architecture: CheW:15:3.85e-24:149:140:138#Response_reg:175:2.24e-20:295:122:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210515::NZ_JAQLCY010000001.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span316955-317857Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMX40_01640RefSeq proteinWP_055184352.1
Context group ID
GCF_028210515::NZ_JAQLCY010000001.1::G00012Context members
PMX40_RS01640
Partner locus tags
PMX40_RS01640
Partner old locus tags
PMX40_01640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055184352.1Primary protein accession used for annex mappings.
UniProt accessionA0A174VES2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174VES2_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMX40_RS01640Primary locus identifier stored in the genes table.
Old locus tagPMX40_01640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCY010000001.1Sequence record reported by the local genomic context database.
Genomic interval316 955-317 857 nt903 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span316 955-317 857 ntGCF_028210515::NZ_JAQLCY010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210515::NZ_JAQLCY010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span316 955-317 857 nt903 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
316 955 nt317 857 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMX40_RS01640GCF_028210515#PMX40_RS01640
RRCheVCurrent focus
316 955-317 857 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS09815Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0572538
Simplified PFAM architecture for RROC_0572538
PFAM domain coverage: 251 / 300 aa (83.7%)
1 aa300 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[16-148] | Response_reg[174-291]
- Domain count: 2
- Matched identifier: RROC_0572538
- Positioned domains: CheW 16-148 ; CheW 16-148 ; Response_reg 174-291 ; Response_reg 174-291
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS09815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210515
AssemblyASM2821051v1 · Scaffoldhaploid
Genome composition3 798 089 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key