1 Response_reg#1
4-116 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:4:1.21e-24:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMX40_RS00710
Response regulator NarL family
Clostridium paraputrificum · GCF_028210515
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210515#PMX40_RS00710Stable P2CS identifier used across views.
GenomeGCF_028210515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 222 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 26.1% of protein
Raw token
HTH_LUXR:146:9.32e-21:203:58:58- Raw architecture: Response_reg:4:1.21e-24:116:113:111#HTH_LUXR:146:9.32e-21:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210515::NZ_JAQLCY010000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125693-127514Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMX40_00710RefSeq proteinWP_027097424.1
Context group ID
GCF_028210515::NZ_JAQLCY010000001.1::G00010Context members
PMX40_RS00705PMX40_RS00710
Partner locus tags
PMX40_RS00705PMX40_RS00710
Partner old locus tags
PMX40_00705PMX40_00710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097424.1Primary protein accession used for annex mappings.
UniProt accessionA0A174C176Primary UniProt accession resolved in the annex database.
UniProt IDA0A174C176_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMX40_RS00710Primary locus identifier stored in the genes table.
Old locus tagPMX40_00710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCY010000001.1Sequence record reported by the local genomic context database.
Genomic interval126 846-127 514 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 693-127 514 ntGCF_028210515::NZ_JAQLCY010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210515::NZ_JAQLCY010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span125 693-127 514 nt1 822 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 693 nt127 514 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMX40_RS00705GCF_028210515#PMX40_RS00705
HKClassic
125 693-126 868 nt · Forward (+)
PMX40_RS00710GCF_028210515#PMX40_RS00710
RRNarLCurrent focus
126 846-127 514 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0104215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1639171
Simplified PFAM architecture for RROC_1639171
PFAM domain coverage: 170 / 222 aa (76.6%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[147-203]
- Domain count: 2
- Matched identifier: RROC_1639171
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 147-203 ; GerE 147-203
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0104215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210515
AssemblyASM2821051v1 · Scaffoldhaploid
Genome composition3 798 089 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key