1 Response_reg#1
7-118 aa · 112 aa · 52.6% of protein
Raw token
Response_reg:7:2.64e-24:118:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMX40_RS00430
Response regulator NarL family
Clostridium paraputrificum · GCF_028210515
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210515#PMX40_RS00430Stable P2CS identifier used across views.
GenomeGCF_028210515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-206 aa · 56 aa · 26.3% of protein
Raw token
HTH_LUXR:151:2.44e-20:206:56:58- Raw architecture: Response_reg:7:2.64e-24:118:112:111#HTH_LUXR:151:2.44e-20:206:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210515::NZ_JAQLCY010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74251-76047Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMX40_00430RefSeq proteinWP_027097372.1
Context group ID
GCF_028210515::NZ_JAQLCY010000001.1::G00008Context members
PMX40_RS00425PMX40_RS00430
Partner locus tags
PMX40_RS00425PMX40_RS00430
Partner old locus tags
PMX40_00425PMX40_00430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097372.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BRZ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BRZ8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMX40_RS00430Primary locus identifier stored in the genes table.
Old locus tagPMX40_00430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCY010000001.1Sequence record reported by the local genomic context database.
Genomic interval75 406-76 047 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 251-76 047 ntGCF_028210515::NZ_JAQLCY010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210515::NZ_JAQLCY010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span74 251-76 047 nt1 797 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 251 nt76 047 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMX40_RS00425GCF_028210515#PMX40_RS00425
HKClassic
74 251-75 402 nt · Forward (+)
PMX40_RS00430GCF_028210515#PMX40_RS00430
RRNarLCurrent focus
75 406-76 047 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0103935Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1963622
Simplified PFAM architecture for RROC_1963622
PFAM domain coverage: 164 / 213 aa (77.0%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-115] | GerE[152-206]
- Domain count: 2
- Matched identifier: RROC_1963622
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; GerE 152-206 ; GerE 152-206
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0103935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210515
AssemblyASM2821051v1 · Scaffoldhaploid
Genome composition3 798 089 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key