1 HAMP#1
153-221 aa · 69 aa · 12.4% of protein
Raw token
HAMP:153:7.51e-17:221:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMX40_RS00925
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210515
ClassHKTypeClassicLength558 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210515#PMX40_RS00925Stable P2CS identifier used across views.
GenomeGCF_028210515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPPAS_8HisKAHATPase_c
Protein length558 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage303 / 558 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa558 aa
Domain-by-domain annotation4 items
2 PAS_8#2
231-291 aa · 61 aa · 10.9% of protein
Raw token
PAS_8:231:0.00000176:291:61:653 HisKA#3
340-404 aa · 65 aa · 11.6% of protein
Raw token
HisKA:340:4.88e-23:404:65:644 HATPase_c#4
449-556 aa · 108 aa · 19.4% of protein
Raw token
HATPase_c:449:2.48e-30:556:108:109- Raw architecture: HAMP:153:7.51e-17:221:69:69#PAS_8:231:0.00000176:291:61:65#HisKA:340:4.88e-23:404:65:64#HATPase_c:449:2.48e-30:556:108:109
- Domain description: 1 HAMP,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210515::NZ_JAQLCY010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170967-173343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMX40_00925RefSeq proteinWP_027097465.1
Context group ID
GCF_028210515::NZ_JAQLCY010000001.1::G00011Context members
PMX40_RS00920PMX40_RS00925
Partner locus tags
PMX40_RS00920PMX40_RS00925
Partner old locus tags
PMX40_00920PMX40_00925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097465.1Primary protein accession used for annex mappings.
UniProt accessionA0A174C5U5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174C5U5_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMX40_RS00925Primary locus identifier stored in the genes table.
Old locus tagPMX40_00925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCY010000001.1Sequence record reported by the local genomic context database.
Genomic interval171 667-173 343 nt1 677 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span170 967-173 343 ntGCF_028210515::NZ_JAQLCY010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210515::NZ_JAQLCY010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span170 967-173 343 nt2 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 967 nt173 343 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMX40_RS00920GCF_028210515#PMX40_RS00920
RROmpR
170 967-171 665 nt · Forward (+)
PMX40_RS00925GCF_028210515#PMX40_RS00925
HKClassicCurrent focus
171 667-173 343 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0104430Use this link to inspect the representative gene detail.
PFAM architectureHAMP + PAS_8 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1264925
Simplified PFAM architecture for HKOC_1264925
PFAM domain coverage: 282 / 558 aa (50.5%)
1 aa558 aa
HAMPPAS_8HisKAHATPase_c
- Simplified architecture: HAMP + PAS_8 + HisKA + HATPase_c
- Raw architecture: HAMP[170-221] | PAS_8[231-287] | HisKA[340-404] | HATPase_c[449-556]
- Domain count: 4
- Matched identifier: HKOC_1264925
- Positioned domains: HAMP 170-221 ; PAS_8 231-287 ; HisKA 340-404 ; HATPase_c 449-556
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0104430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210515
AssemblyASM2821051v1 · Scaffoldhaploid
Genome composition3 798 089 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key