1 PAS_3#1
201-280 aa · 80 aa · 7.2% of protein
Raw token
PAS_3:201:0.00000000000000867:280:80:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS16710
Histidine kinase, Hybrid
Neglectibacter timonensis · GCF_024460865
ClassHKTypeHybridLength1107 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS16710Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1107 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage520 / 1107 aa (47.0%)Merged over positioned domains only.
Domain description3 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1107 aa
Domain-by-domain annotation6 items
2 PAS_3#2
333-408 aa · 76 aa · 6.9% of protein
Raw token
PAS_3:333:0.000000116:408:78:893 PAS_3#3
490-549 aa · 60 aa · 5.4% of protein
Raw token
PAS_3:490:0.0000000324:549:65:894 HisKA#4
726-792 aa · 67 aa · 6.1% of protein
Raw token
HisKA:726:3.96e-18:792:67:645 HATPase_c#5
838-955 aa · 118 aa · 10.7% of protein
Raw token
HATPase_c:838:3.5e-32:955:118:1096 Response_reg#6
982-1100 aa · 119 aa · 10.7% of protein
Raw token
Response_reg:982:2.77e-29:1100:119:111- Raw architecture: PAS_3:201:0.00000000000000867:280:80:89#PAS_3:333:0.000000116:408:78:89#PAS_3:490:0.0000000324:549:65:89#HisKA:726:3.96e-18:792:67:64#HATPase_c:838:3.5e-32:955:118:109#Response_reg:982:2.77e-29:1100:119:111
- Domain description: 3 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000053.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18617-21940Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_16710RefSeq proteinWP_066866400.1
Context group ID
GCF_024460865::NZ_JANFZG010000053.1::G00046Context members
NE546_RS16710
Partner locus tags
NE546_RS16710
Partner old locus tags
NE546_16710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066866400.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1S3T0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1S3T0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS16710Primary locus identifier stored in the genes table.
Old locus tagNE546_16710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000053.1Sequence record reported by the local genomic context database.
Genomic interval18 617-21 940 nt3 324 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 617-21 940 ntGCF_024460865::NZ_JANFZG010000053.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000053.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000053.1All displayed genes belong to this local TCS context.
Neighborhood span18 617-21 940 nt3 324 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 617 nt21 940 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS16710GCF_024460865#NE546_RS16710
HKHybridCurrent focus
18 617-21 940 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS16710The current gene is the representative for this cluster.
PFAM architecturePAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0228447
Simplified PFAM architecture for HKOC_0228447
PFAM domain coverage: 466 / 1107 aa (42.1%)
1 aa1107 aa
PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[201-280] | PAS_3[334-417] | HisKA[726-792] | HATPase_c[838-953] | Response_reg[982-1100]
- Domain count: 5
- Matched identifier: HKOC_0228447
- Positioned domains: PAS_3 201-280 ; PAS_3 334-417 ; HisKA 726-792 ; HATPase_c 838-953 ; Response_reg 982-1100
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS16710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key