1 PAS_9#1
37-141 aa · 105 aa · 9.9% of protein
Raw token
PAS_9:37:0.00000402:141:105:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS14995
Histidine kinase, Hybrid
Neglectibacter timonensis · GCF_024460865
ClassHKTypeHybridLength1062 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS14995Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length1062 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage621 / 1062 aa (58.5%)Merged over positioned domains only.
Domain description2 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1062 aa
Domain-by-domain annotation6 items
2 PAS_9#2
298-402 aa · 105 aa · 9.9% of protein
Raw token
PAS_9:298:0.000000227:402:105:1023 HisKA#3
553-619 aa · 67 aa · 6.3% of protein
Raw token
HisKA:553:0.0000000000000126:619:67:644 HATPase_c#4
667-780 aa · 114 aa · 10.7% of protein
Raw token
HATPase_c:667:8.42e-32:780:114:1095 Response_reg#5
799-910 aa · 112 aa · 10.5% of protein
Raw token
Response_reg:799:5.96e-26:910:112:1116 Response_reg#6
942-1059 aa · 118 aa · 11.1% of protein
Raw token
Response_reg:942:1.96e-30:1059:118:111- Raw architecture: PAS_9:37:0.00000402:141:105:102#PAS_9:298:0.000000227:402:105:102#HisKA:553:0.0000000000000126:619:67:64#HATPase_c:667:8.42e-32:780:114:109#Response_reg:799:5.96e-26:910:112:111#Response_reg:942:1.96e-30:1059:118:111
- Domain description: 2 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000041.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14880-18068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_14995RefSeq proteinWP_256192253.1
Context group ID
GCF_024460865::NZ_JANFZG010000041.1::G00038Context members
NE546_RS14995
Partner locus tags
NE546_RS14995
Partner old locus tags
NE546_14995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256192253.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1S2I9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1S2I9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS14995Primary locus identifier stored in the genes table.
Old locus tagNE546_14995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000041.1Sequence record reported by the local genomic context database.
Genomic interval14 880-18 068 nt3 189 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 880-18 068 ntGCF_024460865::NZ_JANFZG010000041.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000041.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000041.1All displayed genes belong to this local TCS context.
Neighborhood span14 880-18 068 nt3 189 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 880 nt18 068 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS14995GCF_024460865#NE546_RS14995
HKHybridCurrent focus
14 880-18 068 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS14995The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0251661
Simplified PFAM architecture for HKOC_0251661
PFAM domain coverage: 516 / 1062 aa (48.6%)
1 aa1062 aa
PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_9[298-402] | HisKA[553-619] | HATPase_c[667-780] | Response_reg[799-912] | Response_reg[942-1057]
- Domain count: 5
- Matched identifier: HKOC_0251661
- Positioned domains: PAS_9 298-402 ; HisKA 553-619 ; HATPase_c 667-780 ; Response_reg 799-912 ; Response_reg 942-1057
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS14995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key