1 KdpD#1
25-232 aa · 208 aa · 23.2% of protein
Raw token
KdpD:25:6.61e-140:232:208:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS14695
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength898 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS14695Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage389 / 898 aa (43.3%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation3 items
2 HisKA#2
670-737 aa · 68 aa · 7.6% of protein
Raw token
HisKA:670:0.0000000000269:737:68:643 HATPase_c#3
781-893 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:781:3.24e-31:893:113:109- Raw architecture: KdpD:25:6.61e-140:232:208:210#HisKA:670:0.0000000000269:737:68:64#HATPase_c:781:3.24e-31:893:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000039.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20632-24037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_14695RefSeq proteinWP_066863252.1
Context group ID
GCF_024460865::NZ_JANFZG010000039.1::G00033Context members
NE546_RS14695NE546_RS14700
Partner locus tags
NE546_RS14695NE546_RS14700
Partner old locus tags
NE546_14695NE546_14700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066863252.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1S0Z7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1S0Z7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS14695Primary locus identifier stored in the genes table.
Old locus tagNE546_14695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000039.1Sequence record reported by the local genomic context database.
Genomic interval20 632-23 328 nt2 697 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 632-24 037 ntGCF_024460865::NZ_JANFZG010000039.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000039.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000039.1All displayed genes belong to this local TCS context.
Neighborhood span20 632-24 037 nt3 406 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 632 nt24 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS14695GCF_024460865#NE546_RS14695
HKClassicCurrent focus
20 632-23 328 nt · Forward (+)
NE546_RS14700GCF_024460865#NE546_RS14700
RROmpR
23 321-24 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS14695The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0409927
Simplified PFAM architecture for HKOC_0409927
PFAM domain coverage: 494 / 898 aa (55.0%)
1 aa898 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[25-232] | DUF4118[400-506] | HisKA[670-737] | HATPase_c[782-892]
- Domain count: 4
- Matched identifier: HKOC_0409927
- Positioned domains: KdpD 25-232 ; DUF4118 400-506 ; HisKA 670-737 ; HATPase_c 782-892
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS14695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key