1 His_kinase#1
236-316 aa · 81 aa · 18.2% of protein
Raw token
His_kinase:236:2.93e-27:316:82:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS13205
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength444 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS13205Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length444 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 444 aa (39.2%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa444 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
334-426 aa · 93 aa · 20.9% of protein
Raw token
HATPase_c:334:0.0000000000000297:426:104:109- Raw architecture: His_kinase:236:2.93e-27:316:82:80#HATPase_c:334:0.0000000000000297:426:104:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000032.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16110-18198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_13205RefSeq proteinWP_066867419.1
Context group ID
GCF_024460865::NZ_JANFZG010000032.1::G00032Context members
NE546_RS13205NE546_RS13210
Partner locus tags
NE546_RS13205NE546_RS13210
Partner old locus tags
NE546_13205NE546_13210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066867419.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RVR9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RVR9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS13205Primary locus identifier stored in the genes table.
Old locus tagNE546_13205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000032.1Sequence record reported by the local genomic context database.
Genomic interval16 110-17 444 nt1 335 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 110-18 198 ntGCF_024460865::NZ_JANFZG010000032.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000032.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000032.1All displayed genes belong to this local TCS context.
Neighborhood span16 110-18 198 nt2 089 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 110 nt18 198 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS13205GCF_024460865#NE546_RS13205
HKClassicCurrent focus
16 110-17 444 nt · Forward (+)
NE546_RS13210GCF_024460865#NE546_RS13210
RRunclassified
17 404-18 198 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS13205The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2037166
Simplified PFAM architecture for HKOC_2037166
PFAM domain coverage: 172 / 444 aa (38.7%)
1 aa444 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[237-315] | HATPase_c[334-426]
- Domain count: 2
- Matched identifier: HKOC_2037166
- Positioned domains: His_kinase 237-315 ; HATPase_c 334-426
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS13205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key