1 HisKA#1
411-477 aa · 67 aa · 8.4% of protein
Raw token
HisKA:411:3.62e-18:477:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS13120
Histidine kinase, Hybrid
Neglectibacter timonensis · GCF_024460865
ClassHKTypeHybridLength799 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS13120Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length799 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 799 aa (37.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa799 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
524-642 aa · 119 aa · 14.9% of protein
Raw token
HATPase_c:524:5.27e-35:642:119:1093 Response_reg#3
667-782 aa · 116 aa · 14.5% of protein
Raw token
Response_reg:667:4.45e-31:782:116:111- Raw architecture: HisKA:411:3.62e-18:477:67:64#HATPase_c:524:5.27e-35:642:119:109#Response_reg:667:4.45e-31:782:116:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000031.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span40800-43199Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_13120RefSeq proteinWP_256192073.1
Context group ID
GCF_024460865::NZ_JANFZG010000031.1::G00031Context members
NE546_RS13120
Partner locus tags
NE546_RS13120
Partner old locus tags
NE546_13120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256192073.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1S1R3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1S1R3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS13120Primary locus identifier stored in the genes table.
Old locus tagNE546_13120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000031.1Sequence record reported by the local genomic context database.
Genomic interval40 800-43 199 nt2 400 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 800-43 199 ntGCF_024460865::NZ_JANFZG010000031.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000031.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000031.1All displayed genes belong to this local TCS context.
Neighborhood span40 800-43 199 nt2 400 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 800 nt43 199 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS13120GCF_024460865#NE546_RS13120
HKHybridCurrent focus
40 800-43 199 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS13120The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0558856
Simplified PFAM architecture for HKOC_0558856
PFAM domain coverage: 301 / 799 aa (37.7%)
1 aa799 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[411-477] | HATPase_c[524-641] | Response_reg[667-782]
- Domain count: 3
- Matched identifier: HKOC_0558856
- Positioned domains: HisKA 411-477 ; HATPase_c 524-641 ; Response_reg 667-782
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS13120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key