1 HisKA#1
87-148 aa · 62 aa · 20.7% of protein
Raw token
HisKA:87:0.0000000000668:148:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS11970
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength299 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS11970Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 299 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-298 aa · 100 aa · 33.4% of protein
Raw token
HATPase_c:199:1.46e-31:298:100:109- Raw architecture: HisKA:87:0.0000000000668:148:62:64#HATPase_c:199:1.46e-31:298:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000027.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4857-6426Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_11970RefSeq proteinWP_055269992.1
Context group ID
GCF_024460865::NZ_JANFZG010000027.1::G00027Context members
NE546_RS11965NE546_RS11970
Partner locus tags
NE546_RS11965NE546_RS11970
Partner old locus tags
NE546_11965NE546_11970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055269992.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UQZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UQZ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS11970Primary locus identifier stored in the genes table.
Old locus tagNE546_11970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000027.1Sequence record reported by the local genomic context database.
Genomic interval5 527-6 426 nt900 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 857-6 426 ntGCF_024460865::NZ_JANFZG010000027.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000027.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000027.1All displayed genes belong to this local TCS context.
Neighborhood span4 857-6 426 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 857 nt6 426 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS11965GCF_024460865#NE546_RS11965
RROmpR
4 857-5 534 nt · Forward (+)
NE546_RS11970GCF_024460865#NE546_RS11970
HKClassicCurrent focus
5 527-6 426 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845175#FGQ81_RS12030Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2887880
Simplified PFAM architecture for HKOC_2887880
PFAM domain coverage: 164 / 299 aa (54.8%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[198-298]
- Domain count: 2
- Matched identifier: HKOC_2887880
- Positioned domains: HisKA 86-148 ; HATPase_c 198-298
Cluster members and taxonomy
Representative gene: GCF_005845175#FGQ81_RS12030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key