1 PAS_3#1
243-324 aa · 82 aa · 9.5% of protein
Raw token
PAS_3:243:0.000000566:324:87:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS08245
Histidine kinase, Hybrid
Neglectibacter timonensis · GCF_024460865
ClassHKTypeHybridLength867 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS08245Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length867 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage490 / 867 aa (56.5%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa867 aa
Domain-by-domain annotation5 items
2 HisKA#2
353-419 aa · 67 aa · 7.7% of protein
Raw token
HisKA:353:0.00000000000000549:419:67:643 HATPase_c#3
466-583 aa · 118 aa · 13.6% of protein
Raw token
HATPase_c:466:2.55e-31:583:118:1094 Response_reg#4
603-709 aa · 107 aa · 12.3% of protein
Raw token
Response_reg:603:1.49e-19:709:107:1115 Response_reg#5
746-861 aa · 116 aa · 13.4% of protein
Raw token
Response_reg:746:1.62e-31:861:116:111- Raw architecture: PAS_3:243:0.000000566:324:87:89#HisKA:353:0.00000000000000549:419:67:64#HATPase_c:466:2.55e-31:583:118:109#Response_reg:603:1.49e-19:709:107:111#Response_reg:746:1.62e-31:861:116:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000015.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13586-16189Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_08245RefSeq proteinWP_066867056.1
Context group ID
GCF_024460865::NZ_JANFZG010000015.1::G00011Context members
NE546_RS08245
Partner locus tags
NE546_RS08245
Partner old locus tags
NE546_08245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066867056.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RYQ4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RYQ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS08245Primary locus identifier stored in the genes table.
Old locus tagNE546_08245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000015.1Sequence record reported by the local genomic context database.
Genomic interval13 586-16 189 nt2 604 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 586-16 189 ntGCF_024460865::NZ_JANFZG010000015.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000015.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000015.1All displayed genes belong to this local TCS context.
Neighborhood span13 586-16 189 nt2 604 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 586 nt16 189 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS08245GCF_024460865#NE546_RS08245
HKHybridCurrent focus
13 586-16 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS08245The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0463104
Simplified PFAM architecture for HKOC_0463104
PFAM domain coverage: 414 / 867 aa (47.8%)
1 aa867 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[353-419] | HATPase_c[466-582] | Response_reg[603-716] | Response_reg[746-861]
- Domain count: 4
- Matched identifier: HKOC_0463104
- Positioned domains: HisKA 353-419 ; HATPase_c 466-582 ; Response_reg 603-716 ; Response_reg 746-861
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS08245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key