1 PAS_3#1
21-97 aa · 77 aa · 8.5% of protein
Raw token
PAS_3:21:0.000000178:97:77:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS07905
Histidine kinase, Hybrid
Neglectibacter timonensis · GCF_024460865
ClassHKTypeHybridLength903 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS07905Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length903 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage566 / 903 aa (62.7%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa903 aa
Domain-by-domain annotation6 items
2 PAS_3#2
272-351 aa · 80 aa · 8.9% of protein
Raw token
PAS_3:272:0.000000000000486:351:80:893 HisKA#3
392-458 aa · 67 aa · 7.4% of protein
Raw token
HisKA:392:4.13e-17:458:67:644 HATPase_c#4
505-622 aa · 118 aa · 13.1% of protein
Raw token
HATPase_c:505:1.75e-31:622:118:1095 Response_reg#5
639-744 aa · 106 aa · 11.7% of protein
Raw token
Response_reg:639:1.32e-21:744:106:1116 Response_reg#6
782-899 aa · 118 aa · 13.1% of protein
Raw token
Response_reg:782:2.21e-32:899:118:111- Raw architecture: PAS_3:21:0.000000178:97:77:89#PAS_3:272:0.000000000000486:351:80:89#HisKA:392:4.13e-17:458:67:64#HATPase_c:505:1.75e-31:622:118:109#Response_reg:639:1.32e-21:744:106:111#Response_reg:782:2.21e-32:899:118:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000014.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span24623-27334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_07905RefSeq proteinWP_369523747.1
Context group ID
GCF_024460865::NZ_JANFZG010000014.1::G00008Context members
NE546_RS07905
Partner locus tags
NE546_RS07905
Partner old locus tags
NE546_07905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_369523747.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS07905Primary locus identifier stored in the genes table.
Old locus tagNE546_07905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000014.1Sequence record reported by the local genomic context database.
Genomic interval24 623-27 334 nt2 712 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 623-27 334 ntGCF_024460865::NZ_JANFZG010000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000014.1All displayed genes belong to this local TCS context.
Neighborhood span24 623-27 334 nt2 712 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 623 nt27 334 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS07905GCF_024460865#NE546_RS07905
HKHybridCurrent focus
24 623-27 334 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS07905The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0402089
Simplified PFAM architecture for HKOC_0402089
PFAM domain coverage: 491 / 903 aa (54.4%)
1 aa903 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[274-350] | HisKA[392-458] | HATPase_c[505-622] | Response_reg[639-750] | Response_reg[782-898]
- Domain count: 5
- Matched identifier: HKOC_0402089
- Positioned domains: PAS_3 274-350 ; HisKA 392-458 ; HATPase_c 505-622 ; Response_reg 639-750 ; Response_reg 782-898
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS07905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key