1 HisKA#1
359-424 aa · 66 aa · 7.5% of protein
Raw token
HisKA:359:0.00000000000000708:424:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS07865
Histidine kinase, Hybrid
Neglectibacter timonensis · GCF_024460865
ClassHKTypeHybridLength876 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_024460865#NE546_RS07865Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length876 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage405 / 876 aa (46.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa876 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
473-590 aa · 118 aa · 13.5% of protein
Raw token
HATPase_c:473:4.88e-30:590:118:1093 Response_reg#3
609-713 aa · 105 aa · 12.0% of protein
Raw token
Response_reg:609:5.71e-23:713:105:1114 Response_reg#4
752-867 aa · 116 aa · 13.2% of protein
Raw token
Response_reg:752:4.97e-24:867:116:111- Raw architecture: HisKA:359:0.00000000000000708:424:66:64#HATPase_c:473:4.88e-30:590:118:109#Response_reg:609:5.71e-23:713:105:111#Response_reg:752:4.97e-24:867:116:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_024460865::NZ_JANFZG010000014.1::G00007
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span10618-19681Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_07865RefSeq proteinWP_066862721.1
Context group ID
GCF_024460865::NZ_JANFZG010000014.1::G00007Context members
NE546_RS07865NE546_RS07870NE546_RS07880
Partner locus tags
NE546_RS07865NE546_RS07870NE546_RS07880
Partner old locus tags
NE546_07865NE546_07870NE546_07880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066862721.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RYJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RYJ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS07865Primary locus identifier stored in the genes table.
Old locus tagNE546_07865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000014.1Sequence record reported by the local genomic context database.
Genomic interval10 618-13 248 nt2 631 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 618-19 681 ntGCF_024460865::NZ_JANFZG010000014.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000014.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000014.1All displayed genes belong to this local TCS context.
Neighborhood span10 618-19 681 nt9 064 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 618 nt19 681 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
NE546_RS07865GCF_024460865#NE546_RS07865
HKHybridCurrent focus
10 618-13 248 nt · Reverse (-)
NE546_RS07870GCF_024460865#NE546_RS07870
HKHybrid
13 322-17 599 nt · Reverse (-)
NE546_RS07880GCF_024460865#NE546_RS07880
RRPleD_VieA
18 002-19 681 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS07865The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0452606
Simplified PFAM architecture for HKOC_0452606
PFAM domain coverage: 414 / 876 aa (47.3%)
1 aa876 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[359-424] | HATPase_c[473-589] | Response_reg[609-723] | Response_reg[752-867]
- Domain count: 4
- Matched identifier: HKOC_0452606
- Positioned domains: HisKA 359-424 ; HATPase_c 473-589 ; Response_reg 609-723 ; Response_reg 752-867
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS07865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key