1 HAMP#1
96-165 aa · 70 aa · 18.2% of protein
Raw token
HAMP:96:0.000000000000127:165:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS07530
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength384 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS07530Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length384 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 384 aa (62.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa384 aa
Domain-by-domain annotation3 items
2 HisKA#2
170-233 aa · 64 aa · 16.7% of protein
Raw token
HisKA:170:0.00000000409:233:64:643 HATPase_c#3
281-384 aa · 104 aa · 27.1% of protein
Raw token
HATPase_c:281:3.34e-28:384:105:109- Raw architecture: HAMP:96:0.000000000000127:165:70:69#HisKA:170:0.00000000409:233:64:64#HATPase_c:281:3.34e-28:384:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000013.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23340-25180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_07530RefSeq proteinWP_066860993.1
Context group ID
GCF_024460865::NZ_JANFZG010000013.1::G00006Context members
NE546_RS07525NE546_RS07530
Partner locus tags
NE546_RS07525NE546_RS07530
Partner old locus tags
NE546_07525NE546_07530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066860993.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RZA4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RZA4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS07530Primary locus identifier stored in the genes table.
Old locus tagNE546_07530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000013.1Sequence record reported by the local genomic context database.
Genomic interval24 026-25 180 nt1 155 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 340-25 180 ntGCF_024460865::NZ_JANFZG010000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000013.1All displayed genes belong to this local TCS context.
Neighborhood span23 340-25 180 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 340 nt25 180 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS07525GCF_024460865#NE546_RS07525
RROmpR
23 340-24 029 nt · Forward (+)
NE546_RS07530GCF_024460865#NE546_RS07530
HKClassicCurrent focus
24 026-25 180 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS07530The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2576817
Simplified PFAM architecture for HKOC_2576817
PFAM domain coverage: 219 / 384 aa (57.0%)
1 aa384 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[113-165] | HisKA[171-232] | HATPase_c[280-383]
- Domain count: 3
- Matched identifier: HKOC_2576817
- Positioned domains: HAMP 113-165 ; HisKA 171-232 ; HATPase_c 280-383
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS07530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key