1 HAMP#1
296-365 aa · 70 aa · 11.8% of protein
Raw token
HAMP:296:0.00000000669:365:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS06835
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS06835Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 594 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation3 items
2 His_kinase#2
380-459 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:380:1.98e-31:459:80:803 HATPase_c#3
475-580 aa · 106 aa · 17.8% of protein
Raw token
HATPase_c:475:0.0000000000000282:580:110:109- Raw architecture: HAMP:296:0.00000000669:365:70:69#His_kinase:380:1.98e-31:459:80:80#HATPase_c:475:0.0000000000000282:580:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000011.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71358-74689Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_06835RefSeq proteinWP_082942222.1
Context group ID
GCF_024460865::NZ_JANFZG010000011.1::G00003Context members
NE546_RS06835NE546_RS06840
Partner locus tags
NE546_RS06835NE546_RS06840
Partner old locus tags
NE546_06835NE546_06840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_082942222.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RXN8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RXN8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS06835Primary locus identifier stored in the genes table.
Old locus tagNE546_06835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000011.1Sequence record reported by the local genomic context database.
Genomic interval71 358-73 142 nt1 785 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 358-74 689 ntGCF_024460865::NZ_JANFZG010000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000011.1All displayed genes belong to this local TCS context.
Neighborhood span71 358-74 689 nt3 332 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 358 nt74 689 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS06835GCF_024460865#NE546_RS06835
HKClassicCurrent focus
71 358-73 142 nt · Reverse (-)
NE546_RS06840GCF_024460865#NE546_RS06840
RRunclassified
73 139-74 689 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS06835The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1090384
Simplified PFAM architecture for HKOC_1090384
PFAM domain coverage: 185 / 594 aa (31.1%)
1 aa594 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[380-458] | HATPase_c[475-580]
- Domain count: 2
- Matched identifier: HKOC_1090384
- Positioned domains: His_kinase 380-458 ; HATPase_c 475-580
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS06835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key