1 HisKA#1
199-262 aa · 64 aa · 15.3% of protein
Raw token
HisKA:199:0.00000000000000143:262:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS06260
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength419 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS06260Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length419 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 419 aa (41.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa419 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-415 aa · 108 aa · 25.8% of protein
Raw token
HATPase_c:308:1.37e-28:415:109:109- Raw architecture: HisKA:199:0.00000000000000143:262:64:64#HATPase_c:308:1.37e-28:415:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54477-56413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_06255RefSeq proteinWP_066867550.1
Context group ID
GCF_024460865::NZ_JANFZG010000010.1::G00001Context members
NE546_RS06255NE546_RS06260
Partner locus tags
NE546_RS06255NE546_RS06260
Partner old locus tags
NE546_06250NE546_06255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066867550.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RX18Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RX18_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS06260Primary locus identifier stored in the genes table.
Old locus tagNE546_06255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000010.1Sequence record reported by the local genomic context database.
Genomic interval55 154-56 413 nt1 260 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 477-56 413 ntGCF_024460865::NZ_JANFZG010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000010.1All displayed genes belong to this local TCS context.
Neighborhood span54 477-56 413 nt1 937 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 477 nt56 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS06255GCF_024460865#NE546_RS06255
RROmpR
54 477-55 157 nt · Forward (+)
NE546_RS06260GCF_024460865#NE546_RS06260
HKClassicCurrent focus
55 154-56 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS06260The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2279910
Simplified PFAM architecture for HKOC_2279910
PFAM domain coverage: 172 / 419 aa (41.1%)
1 aa419 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[200-262] | HATPase_c[308-416]
- Domain count: 2
- Matched identifier: HKOC_2279910
- Positioned domains: HisKA 200-262 ; HATPase_c 308-416
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS06260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key