1 HAMP#1
180-246 aa · 67 aa · 13.7% of protein
Raw token
HAMP:180:0.000000000174:246:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS05725
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS05725Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 488 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 HisKA#2
257-319 aa · 63 aa · 12.9% of protein
Raw token
HisKA:257:0.00000000000119:319:63:643 HATPase_c#3
366-478 aa · 113 aa · 23.2% of protein
Raw token
HATPase_c:366:5.42e-25:478:113:109- Raw architecture: HAMP:180:0.000000000174:246:68:69#HisKA:257:0.00000000000119:319:63:64#HATPase_c:366:5.42e-25:478:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000009.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35944-38088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_05720RefSeq proteinWP_066860087.1
Context group ID
GCF_024460865::NZ_JANFZG010000009.1::G00061Context members
NE546_RS05725NE546_RS05730
Partner locus tags
NE546_RS05725NE546_RS05730
Partner old locus tags
NE546_05720NE546_05725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066860087.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RX74Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RX74_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS05725Primary locus identifier stored in the genes table.
Old locus tagNE546_05720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000009.1Sequence record reported by the local genomic context database.
Genomic interval35 944-37 410 nt1 467 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 944-38 088 ntGCF_024460865::NZ_JANFZG010000009.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000009.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000009.1All displayed genes belong to this local TCS context.
Neighborhood span35 944-38 088 nt2 145 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 944 nt38 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS05725GCF_024460865#NE546_RS05725
HKClassicCurrent focus
35 944-37 410 nt · Reverse (-)
NE546_RS05730GCF_024460865#NE546_RS05730
RROmpR
37 432-38 088 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS05725The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1554314
Simplified PFAM architecture for HKOC_1554314
PFAM domain coverage: 225 / 488 aa (46.1%)
1 aa488 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-245] | HisKA[258-319] | HATPase_c[367-477]
- Domain count: 3
- Matched identifier: HKOC_1554314
- Positioned domains: HAMP 194-245 ; HisKA 258-319 ; HATPase_c 367-477
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS05725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key