1 Response_reg#1
4-114 aa · 111 aa · 48.9% of protein
Raw token
Response_reg:4:8.49e-32:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS04820
Response regulator OmpR family
Neglectibacter timonensis · GCF_024460865
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS04820Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.6% of protein
Raw token
Trans_reg_C:151:3e-30:224:77:77- Raw architecture: Response_reg:4:8.49e-32:114:112:111#Trans_reg_C:151:3e-30:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000007.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98594-100740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_04815RefSeq proteinWP_066862229.1
Context group ID
GCF_024460865::NZ_JANFZG010000007.1::G00057Context members
NE546_RS04815NE546_RS04820
Partner locus tags
NE546_RS04815NE546_RS04820
Partner old locus tags
NE546_04810NE546_04815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066862229.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RW57Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RW57_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS04820Primary locus identifier stored in the genes table.
Old locus tagNE546_04815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000007.1Sequence record reported by the local genomic context database.
Genomic interval100 057-100 740 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 594-100 740 ntGCF_024460865::NZ_JANFZG010000007.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000007.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000007.1All displayed genes belong to this local TCS context.
Neighborhood span98 594-100 740 nt2 147 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 594 nt100 740 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS04815GCF_024460865#NE546_RS04815
HKClassic
98 594-100 060 nt · Reverse (-)
NE546_RS04820GCF_024460865#NE546_RS04820
RROmpRCurrent focus
100 057-100 740 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS04820The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1382410
Simplified PFAM architecture for RROC_1382410
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1382410
- Positioned domains: Response_reg 4-114 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS04820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key