1 Response_reg#1
4-120 aa · 117 aa · 48.8% of protein
Raw token
Response_reg:4:0.00000000067:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS04480
Response regulator LytTR family
Neglectibacter timonensis · GCF_024460865
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS04480Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 240 aa (86.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-232 aa · 90 aa · 37.5% of protein
Raw token
LytTR:143:0.000000000128:232:95:98- Raw architecture: Response_reg:4:0.00000000067:120:119:111#LytTR:143:0.000000000128:232:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000007.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29412-30134Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_04475RefSeq proteinWP_256191568.1
Context group ID
GCF_024460865::NZ_JANFZG010000007.1::G00055Context members
NE546_RS04480
Partner locus tags
NE546_RS04480
Partner old locus tags
NE546_04475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256191568.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RXA4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RXA4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS04480Primary locus identifier stored in the genes table.
Old locus tagNE546_04475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000007.1Sequence record reported by the local genomic context database.
Genomic interval29 412-30 134 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 412-30 134 ntGCF_024460865::NZ_JANFZG010000007.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000007.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000007.1All displayed genes belong to this local TCS context.
Neighborhood span29 412-30 134 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 412 nt30 134 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS04480GCF_024460865#NE546_RS04480
RRLytTRCurrent focus
29 412-30 134 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS04480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0895712
Simplified PFAM architecture for RROC_0895712
PFAM domain coverage: 206 / 240 aa (85.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[143-232]
- Domain count: 2
- Matched identifier: RROC_0895712
- Positioned domains: Response_reg 4-119 ; LytTR 143-232
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS04480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key