1 Response_reg#1
6-109 aa · 104 aa · 39.8% of protein
Raw token
Response_reg:6:2.35e-18:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS04125
Response regulator, unclassified
Neglectibacter timonensis · GCF_024460865
ClassRRTypeunclassifiedLength261 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS04125Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage104 / 261 aa (39.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.35e-18:109:107:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000006.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81363-83440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_04120RefSeq proteinWP_066861710.1
Context group ID
GCF_024460865::NZ_JANFZG010000006.1::G00048Context members
NE546_RS04125NE546_RS04130
Partner locus tags
NE546_RS04125NE546_RS04130
Partner old locus tags
NE546_04120NE546_04125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066861710.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RW05Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RW05_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS04125Primary locus identifier stored in the genes table.
Old locus tagNE546_04120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000006.1Sequence record reported by the local genomic context database.
Genomic interval81 363-82 148 nt786 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 363-83 440 ntGCF_024460865::NZ_JANFZG010000006.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000006.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000006.1All displayed genes belong to this local TCS context.
Neighborhood span81 363-83 440 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 363 nt83 440 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS04125GCF_024460865#NE546_RS04125
RRunclassifiedCurrent focus
81 363-82 148 nt · Reverse (-)
NE546_RS04130GCF_024460865#NE546_RS04130
HKClassic
82 145-83 440 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS04125The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0650885
Simplified PFAM architecture for RROC_0650885
PFAM domain coverage: 107 / 261 aa (41.0%)
1 aa261 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-111]
- Domain count: 1
- Matched identifier: RROC_0650885
- Positioned domains: Response_reg 5-111
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS04125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key