1 HAMP#1
181-250 aa · 70 aa · 14.4% of protein
Raw token
HAMP:181:7.42e-16:250:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS03775
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS03775Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 486 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-314 aa · 54 aa · 11.1% of protein
Raw token
HisKA:261:0.000000000255:314:54:643 HATPase_c#3
371-480 aa · 110 aa · 22.6% of protein
Raw token
HATPase_c:371:2.86e-27:480:110:109- Raw architecture: HAMP:181:7.42e-16:250:70:69#HisKA:261:0.000000000255:314:54:64#HATPase_c:371:2.86e-27:480:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000006.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16999-19130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_03770RefSeq proteinWP_256191542.1
Context group ID
GCF_024460865::NZ_JANFZG010000006.1::G00047Context members
NE546_RS03770NE546_RS03775
Partner locus tags
NE546_RS03770NE546_RS03775
Partner old locus tags
NE546_03765NE546_03770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256191542.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RVU3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RVU3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS03775Primary locus identifier stored in the genes table.
Old locus tagNE546_03770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000006.1Sequence record reported by the local genomic context database.
Genomic interval17 670-19 130 nt1 461 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 999-19 130 ntGCF_024460865::NZ_JANFZG010000006.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000006.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000006.1All displayed genes belong to this local TCS context.
Neighborhood span16 999-19 130 nt2 132 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 999 nt19 130 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS03770GCF_024460865#NE546_RS03770
RROmpR
16 999-17 673 nt · Forward (+)
NE546_RS03775GCF_024460865#NE546_RS03775
HKClassicCurrent focus
17 670-19 130 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS03775The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1571865
Simplified PFAM architecture for HKOC_1571865
PFAM domain coverage: 219 / 486 aa (45.1%)
1 aa486 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[198-250] | HisKA[262-317] | HATPase_c[371-480]
- Domain count: 3
- Matched identifier: HKOC_1571865
- Positioned domains: HAMP 198-250 ; HisKA 262-317 ; HATPase_c 371-480
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS03775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key