1 HAMP#1
306-375 aa · 70 aa · 11.7% of protein
Raw token
HAMP:306:0.000000000145:375:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS03475
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS03475Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 599 aa (41.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-469 aa · 78 aa · 13.0% of protein
Raw token
His_kinase:392:1.41e-28:469:78:803 HATPase_c#3
488-586 aa · 99 aa · 16.5% of protein
Raw token
HATPase_c:488:0.00000000000135:586:105:109- Raw architecture: HAMP:306:0.000000000145:375:70:69#His_kinase:392:1.41e-28:469:78:80#HATPase_c:488:0.00000000000135:586:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000005.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span77194-79723Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_03475RefSeq proteinWP_066860449.1
Context group ID
GCF_024460865::NZ_JANFZG010000005.1::G00044Context members
NE546_RS03475NE546_RS03480
Partner locus tags
NE546_RS03475NE546_RS03480
Partner old locus tags
NE546_03475NE546_03480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066860449.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RYG6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RYG6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS03475Primary locus identifier stored in the genes table.
Old locus tagNE546_03475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000005.1Sequence record reported by the local genomic context database.
Genomic interval77 194-78 993 nt1 800 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 194-79 723 ntGCF_024460865::NZ_JANFZG010000005.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000005.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000005.1All displayed genes belong to this local TCS context.
Neighborhood span77 194-79 723 nt2 530 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 194 nt79 723 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS03475GCF_024460865#NE546_RS03475
HKClassicCurrent focus
77 194-78 993 nt · Reverse (-)
NE546_RS03480GCF_024460865#NE546_RS03480
RRunclassified
78 983-79 723 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS03475The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1059771
Simplified PFAM architecture for HKOC_1059771
PFAM domain coverage: 227 / 599 aa (37.9%)
1 aa599 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[324-374] | His_kinase[392-468] | HATPase_c[488-586]
- Domain count: 3
- Matched identifier: HKOC_1059771
- Positioned domains: HAMP 324-374 ; His_kinase 392-468 ; HATPase_c 488-586
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS03475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key