1 HisKA#1
333-399 aa · 67 aa · 9.4% of protein
Raw token
HisKA:333:0.00000000000000674:399:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS03440
Histidine kinase, Hybrid
Neglectibacter timonensis · GCF_024460865
ClassHKTypeHybridLength711 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS03440Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length711 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 711 aa (42.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa711 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
446-559 aa · 114 aa · 16.0% of protein
Raw token
HATPase_c:446:1.6e-30:559:114:1093 Response_reg#3
585-702 aa · 118 aa · 16.6% of protein
Raw token
Response_reg:585:6.61e-32:702:118:111- Raw architecture: HisKA:333:0.00000000000000674:399:68:64#HATPase_c:446:1.6e-30:559:114:109#Response_reg:585:6.61e-32:702:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000005.1::G00043
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span68733-70868Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_03440RefSeq proteinWP_066860432.1
Context group ID
GCF_024460865::NZ_JANFZG010000005.1::G00043Context members
NE546_RS03440
Partner locus tags
NE546_RS03440
Partner old locus tags
NE546_03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066860432.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RYE4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RYE4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS03440Primary locus identifier stored in the genes table.
Old locus tagNE546_03440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000005.1Sequence record reported by the local genomic context database.
Genomic interval68 733-70 868 nt2 136 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span68 733-70 868 ntGCF_024460865::NZ_JANFZG010000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000005.1All displayed genes belong to this local TCS context.
Neighborhood span68 733-70 868 nt2 136 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 733 nt70 868 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS03440GCF_024460865#NE546_RS03440
HKHybridCurrent focus
68 733-70 868 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS03440The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0749958
Simplified PFAM architecture for HKOC_0749958
PFAM domain coverage: 298 / 711 aa (41.9%)
1 aa711 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[333-399] | HATPase_c[446-559] | Response_reg[585-701]
- Domain count: 3
- Matched identifier: HKOC_0749958
- Positioned domains: HisKA 333-399 ; HATPase_c 446-559 ; Response_reg 585-701
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS03440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key