1 Response_reg#1
1-107 aa · 107 aa · 48.6% of protein
Raw token
Response_reg:1:1.32e-27:107:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS03135
Response regulator OmpR family
Neglectibacter timonensis · GCF_024460865
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS03135Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-216 aa · 77 aa · 35.0% of protein
Raw token
Trans_reg_C:140:3.63e-32:216:77:77- Raw architecture: Response_reg:1:1.32e-27:107:108:111#Trans_reg_C:140:3.63e-32:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000004.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span155037-156617Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_03135RefSeq proteinWP_308211528.1
Context group ID
GCF_024460865::NZ_JANFZG010000004.1::G00037Context members
NE546_RS03135NE546_RS03140
Partner locus tags
NE546_RS03135NE546_RS03140
Partner old locus tags
NE546_03135NE546_03140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308211528.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS03135Primary locus identifier stored in the genes table.
Old locus tagNE546_03135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000004.1Sequence record reported by the local genomic context database.
Genomic interval155 037-155 699 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span155 037-156 617 ntGCF_024460865::NZ_JANFZG010000004.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000004.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000004.1All displayed genes belong to this local TCS context.
Neighborhood span155 037-156 617 nt1 581 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 037 nt156 617 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS03135GCF_024460865#NE546_RS03135
RROmpRCurrent focus
155 037-155 699 nt · Forward (+)
NE546_RS03140GCF_024460865#NE546_RS03140
HKClassic
155 745-156 617 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS03135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1744598
Simplified PFAM architecture for RROC_1744598
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-106] | Trans_reg_C[140-215]
- Domain count: 2
- Matched identifier: RROC_1744598
- Positioned domains: Response_reg 2-106 ; Trans_reg_C 140-215
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS03135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key