1 Response_reg#1
7-114 aa · 108 aa · 47.8% of protein
Raw token
Response_reg:7:6.71e-30:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NG853_RS00340
Response regulator OmpR family
Enterococcus faecium · GCF_023956545
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023956545#NG853_RS00340Stable P2CS identifier used across views.
GenomeGCF_023956545Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 226 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:151:3.4e-28:225:77:77- Raw architecture: Response_reg:7:6.71e-30:114:110:111#Trans_reg_C:151:3.4e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023956545::NZ_JAMXGQ010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71195-72764Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNG853_00340RefSeq proteinWP_002324452.1
Context group ID
GCF_023956545::NZ_JAMXGQ010000001.1::G00001Context members
NG853_RS00335NG853_RS00340
Partner locus tags
NG853_RS00335NG853_RS00340
Partner old locus tags
NG853_00335NG853_00340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002324452.1Primary protein accession used for annex mappings.
UniProt accessionA0A829FB75Primary UniProt accession resolved in the annex database.
UniProt IDA0A829FB75_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNG853_RS00340Primary locus identifier stored in the genes table.
Old locus tagNG853_00340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMXGQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval72 084-72 764 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 195-72 764 ntGCF_023956545::NZ_JAMXGQ010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023956545::NZ_JAMXGQ010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMXGQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 195-72 764 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 195 nt72 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NG853_RS00335GCF_023956545#NG853_RS00335
HKClassic
71 195-72 091 nt · Reverse (-)
NG853_RS00340GCF_023956545#NG853_RS00340
RROmpRCurrent focus
72 084-72 764 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000321465#OG9_RS16555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1409875
Simplified PFAM architecture for RROC_1409875
PFAM domain coverage: 181 / 226 aa (80.1%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-114] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1409875
- Positioned domains: Response_reg 7-114 ; Response_reg 7-114 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000321465#OG9_RS16555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_023956545
AssemblyASM2395654v1 · Contighaploid
Genome composition2 546 321 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 29 · HK 15 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key