1 Response_reg#1
7-114 aa · 108 aa · 47.8% of protein
Raw token
Response_reg:7:6.71e-30:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OG9_RS16555
Response regulator OmpR family
Enterococcus faecium EnGen0005 · GCF_000321465
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000321465#OG9_RS16555Stable P2CS identifier used across views.
GenomeGCF_000321465Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 226 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:151:3.4e-28:225:77:77- Raw architecture: Response_reg:7:6.71e-30:114:110:111#Trans_reg_C:151:3.4e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000321465::NZ_KB029385.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59506-61075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOG9_04924RefSeq proteinWP_002324452.1
Context group ID
GCF_000321465::NZ_KB029385.1::G00016Context members
OG9_RS16555OG9_RS16560
Partner locus tags
OG9_RS16555OG9_RS16560
Partner old locus tags
OG9_04924OG9_04925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002324452.1Primary protein accession used for annex mappings.
UniProt accessionA0A829FB75Primary UniProt accession resolved in the annex database.
UniProt IDA0A829FB75_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOG9_RS16555Primary locus identifier stored in the genes table.
Old locus tagOG9_04924Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029385.1Sequence record reported by the local genomic context database.
Genomic interval59 506-60 186 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 506-61 075 ntGCF_000321465::NZ_KB029385.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321465::NZ_KB029385.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029385.1All displayed genes belong to this local TCS context.
Neighborhood span59 506-61 075 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 506 nt61 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OG9_RS16555GCF_000321465#OG9_RS16555
RROmpRCurrent focus
59 506-60 186 nt · Forward (+)
OG9_RS16560GCF_000321465#OG9_RS16560
HKClassic
60 179-61 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000321465#OG9_RS16555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1409875
Simplified PFAM architecture for RROC_1409875
PFAM domain coverage: 181 / 226 aa (80.1%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-114] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1409875
- Positioned domains: Response_reg 7-114 ; Response_reg 7-114 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000321465#OG9_RS16555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 880 · GCF_000321465
AssemblyEnte_faec_E0045_V1 · Scaffoldhaploid
Genome composition2 719 774 bp · 38,0% GCEnterococcus faecium EnGen0005
Signal transduction countsGenes 31 · HK 15 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key