1 Response_reg#1
6-119 aa · 114 aa · 23.6% of protein
Raw token
Response_reg:6:1.26e-24:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NG853_RS03055
Response regulator, unclassified
Enterococcus faecium · GCF_023956545
ClassRRTypeunclassifiedLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023956545#NG853_RS03055Stable P2CS identifier used across views.
GenomeGCF_023956545Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 483 aa (40.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
387-428 aa · 42 aa · 8.7% of protein
Raw token
HTH_AraC:387:0.0000000129:428:42:423 HTH_AraC#3
440-477 aa · 38 aa · 7.9% of protein
Raw token
HTH_AraC:440:0.00000000371:477:38:42- Raw architecture: Response_reg:6:1.26e-24:119:114:111#HTH_AraC:387:0.0000000129:428:42:42#HTH_AraC:440:0.00000000371:477:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023956545::NZ_JAMXGQ010000008.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28687-31859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNG853_03055RefSeq proteinWP_025478712.1
Context group ID
GCF_023956545::NZ_JAMXGQ010000008.1::G00016Context members
NG853_RS03055NG853_RS03060
Partner locus tags
NG853_RS03055NG853_RS03060
Partner old locus tags
NG853_03055NG853_03060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025478712.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U4H0Y9Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U4H0Y9_ENTFCDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNG853_RS03055Primary locus identifier stored in the genes table.
Old locus tagNG853_03055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMXGQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval28 687-30 138 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 687-31 859 ntGCF_023956545::NZ_JAMXGQ010000008.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023956545::NZ_JAMXGQ010000008.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMXGQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span28 687-31 859 nt3 173 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 687 nt31 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NG853_RS03055GCF_023956545#NG853_RS03055
RRunclassifiedCurrent focus
28 687-30 138 nt · Reverse (-)
NG853_RS03060GCF_023956545#NG853_RS03060
HKClassic
30 135-31 859 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000321485#OGA_RS19665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0177260
Simplified PFAM architecture for RROC_0177260
PFAM domain coverage: 190 / 483 aa (39.3%)
1 aa483 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[402-478]
- Domain count: 2
- Matched identifier: RROC_0177260
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; HTH_18 402-478 ; HTH_18 402-478
Cluster members and taxonomy
Representative gene: GCF_000321485#OGA_RS19665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_023956545
AssemblyASM2395654v1 · Contighaploid
Genome composition2 546 321 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 29 · HK 15 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key