1 CheW#1
18-153 aa · 136 aa · 45.0% of protein
Raw token
CheW:18:5.73e-38:153:137:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M3689_RS03370
Response regulator CheV family
Alkalihalophilus marmarensis · GCF_023712545
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023712545#M3689_RS03370Stable P2CS identifier used across views.
GenomeGCF_023712545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
177-296 aa · 120 aa · 39.7% of protein
Raw token
Response_reg:177:5.28e-23:296:124:111- Raw architecture: CheW:18:5.73e-38:153:137:138#Response_reg:177:5.28e-23:296:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023712545::NZ_JAMAYA010000002.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span238579-239487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM3689_03365RefSeq proteinWP_251188771.1
Context group ID
GCF_023712545::NZ_JAMAYA010000002.1::G00023Context members
M3689_RS03370
Partner locus tags
M3689_RS03370
Partner old locus tags
M3689_03365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_251188771.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM3689_RS03370Primary locus identifier stored in the genes table.
Old locus tagM3689_03365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMAYA010000002.1Sequence record reported by the local genomic context database.
Genomic interval238 579-239 487 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span238 579-239 487 ntGCF_023712545::NZ_JAMAYA010000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023712545::NZ_JAMAYA010000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMAYA010000002.1All displayed genes belong to this local TCS context.
Neighborhood span238 579-239 487 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 579 nt239 487 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M3689_RS03370GCF_023712545#M3689_RS03370
RRCheVCurrent focus
238 579-239 487 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023712545#M3689_RS03370The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0569481
Simplified PFAM architecture for RROC_0569481
PFAM domain coverage: 254 / 302 aa (84.1%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-151] | Response_reg[177-296]
- Domain count: 2
- Matched identifier: RROC_0569481
- Positioned domains: CheW 18-151 ; Response_reg 177-296
Cluster members and taxonomy
Representative gene: GCF_023712545#M3689_RS03370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_023712545
AssemblyASM2371254v1 · Contighaploid
Genome composition4 103 950 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 71 · HK 38 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key