1 Hpt#1
5-98 aa · 94 aa · 13.5% of protein
Raw token
Hpt:5:1.53e-17:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M3689_RS01680
Histidine kinase, CheA
Alkalihalophilus marmarensis · GCF_023712545
ClassHKTypeCheALength696 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023712545#M3689_RS01680Stable P2CS identifier used across views.
GenomeGCF_023712545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length696 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage422 / 696 aa (60.6%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa696 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
317-376 aa · 60 aa · 8.6% of protein
Raw token
H-kinase_dim:317:1.23e-16:376:67:673 HATPase_c#3
424-563 aa · 140 aa · 20.1% of protein
Raw token
HATPase_c:424:0.00000000000000221:563:140:1094 CheW#4
568-695 aa · 128 aa · 18.4% of protein
Raw token
CheW:568:6.58e-25:695:135:138- Raw architecture: Hpt:5:1.53e-17:98:94:84#H-kinase_dim:317:1.23e-16:376:67:67#HATPase_c:424:0.00000000000000221:563:140:109#CheW:568:6.58e-25:695:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023712545::NZ_JAMAYA010000001.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span336487-338574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM3689_01680RefSeq proteinWP_022628633.1
Context group ID
GCF_023712545::NZ_JAMAYA010000001.1::G00016Context members
M3689_RS01680
Partner locus tags
M3689_RS01680
Partner old locus tags
M3689_01680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022628633.1Primary protein accession used for annex mappings.
UniProt accessionU6SPD2Primary UniProt accession resolved in the annex database.
UniProt IDU6SPD2_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM3689_RS01680Primary locus identifier stored in the genes table.
Old locus tagM3689_01680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMAYA010000001.1Sequence record reported by the local genomic context database.
Genomic interval336 487-338 574 nt2 088 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span336 487-338 574 ntGCF_023712545::NZ_JAMAYA010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023712545::NZ_JAMAYA010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMAYA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span336 487-338 574 nt2 088 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
336 487 nt338 574 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M3689_RS01680GCF_023712545#M3689_RS01680
HKCheACurrent focus
336 487-338 574 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000474275#A33I_RS11865Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0777890
Simplified PFAM architecture for HKOC_0777890
PFAM domain coverage: 507 / 696 aa (72.8%)
1 aa696 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-104] | P2[175-254] | H-kinase_dim[317-376] | HATPase_c[424-563] | CheW[569-695]
- Domain count: 5
- Matched identifier: HKOC_0777890
- Positioned domains: Hpt 5-104 ; P2 175-254 ; H-kinase_dim 317-376 ; HATPase_c 424-563 ; CheW 569-695
Cluster members and taxonomy
Representative gene: GCF_000474275#A33I_RS11865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_023712545
AssemblyASM2371254v1 · Contighaploid
Genome composition4 103 950 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 71 · HK 38 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key