1 sCache_like#1
35-151 aa · 117 aa · 19.7% of protein
Raw token
sCache_like:35:5.05e-25:151:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M3689_RS00570
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_023712545
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023712545#M3689_RS00570Stable P2CS identifier used across views.
GenomeGCF_023712545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 593 aa (79.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation5 items
2 HAMP#2
167-236 aa · 70 aa · 11.8% of protein
Raw token
HAMP:167:0.0000000000322:236:70:693 PAS#3
246-353 aa · 108 aa · 18.2% of protein
Raw token
PAS:246:0.0000000000576:353:113:1134 HisKA#4
363-428 aa · 66 aa · 11.1% of protein
Raw token
HisKA:363:2.65e-17:428:66:645 HATPase_c#5
474-582 aa · 109 aa · 18.4% of protein
Raw token
HATPase_c:474:2.54e-34:582:109:109- Raw architecture: sCache_like:35:5.05e-25:151:117:114#HAMP:167:0.0000000000322:236:70:69#PAS:246:0.0000000000576:353:113:113#HisKA:363:2.65e-17:428:66:64#HATPase_c:474:2.54e-34:582:109:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023712545::NZ_JAMAYA010000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119367-121866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM3689_00570RefSeq proteinWP_022628831.1
Context group ID
GCF_023712545::NZ_JAMAYA010000001.1::G00015Context members
M3689_RS00565M3689_RS00570
Partner locus tags
M3689_RS00565M3689_RS00570
Partner old locus tags
M3689_00565M3689_00570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022628831.1Primary protein accession used for annex mappings.
UniProt accessionU6SLB3Primary UniProt accession resolved in the annex database.
UniProt IDU6SLB3_9BACIDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM3689_RS00570Primary locus identifier stored in the genes table.
Old locus tagM3689_00570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMAYA010000001.1Sequence record reported by the local genomic context database.
Genomic interval120 085-121 866 nt1 782 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 367-121 866 ntGCF_023712545::NZ_JAMAYA010000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023712545::NZ_JAMAYA010000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMAYA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span119 367-121 866 nt2 500 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 367 nt121 866 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M3689_RS00565GCF_023712545#M3689_RS00565
RROmpR
119 367-120 092 nt · Forward (+)
M3689_RS00570GCF_023712545#M3689_RS00570
HKClassicCurrent focus
120 085-121 866 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000474275#A33I_RS13085Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1093117
Simplified PFAM architecture for HKOC_1093117
PFAM domain coverage: 454 / 593 aa (76.6%)
1 aa593 aa
sCache_likeHAMPPASHisKAHATPase_c
- Simplified architecture: sCache_like + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: sCache_like[33-151] | HAMP[185-235] | PAS[246-353] | HisKA[363-428] | HATPase_c[474-583]
- Domain count: 5
- Matched identifier: HKOC_1093117
- Positioned domains: sCache_like 33-151 ; HAMP 185-235 ; PAS 246-353 ; HisKA 363-428 ; HATPase_c 474-583
Cluster members and taxonomy
Representative gene: GCF_000474275#A33I_RS13085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_023712545
AssemblyASM2371254v1 · Contighaploid
Genome composition4 103 950 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 71 · HK 38 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key