1 Response_reg#1
7-115 aa · 109 aa · 44.7% of protein
Raw token
Response_reg:7:2.31e-27:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M3689_RS01965
Response regulator LytTR family
Alkalihalophilus marmarensis · GCF_023712545
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023712545#M3689_RS01965Stable P2CS identifier used across views.
GenomeGCF_023712545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 244 aa (85.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-243 aa · 99 aa · 40.6% of protein
Raw token
LytTR:145:5.58e-25:243:99:98- Raw architecture: Response_reg:7:2.31e-27:115:111:111#LytTR:145:5.58e-25:243:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023712545::NZ_JAMAYA010000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span397579-400054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM3689_01965RefSeq proteinWP_022628587.1
Context group ID
GCF_023712545::NZ_JAMAYA010000001.1::G00019Context members
M3689_RS01960M3689_RS01965
Partner locus tags
M3689_RS01960M3689_RS01965
Partner old locus tags
M3689_01960M3689_01965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022628587.1Primary protein accession used for annex mappings.
UniProt accessionU6SM72Primary UniProt accession resolved in the annex database.
UniProt IDU6SM72_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM3689_RS01965Primary locus identifier stored in the genes table.
Old locus tagM3689_01965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMAYA010000001.1Sequence record reported by the local genomic context database.
Genomic interval399 320-400 054 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span397 579-400 054 ntGCF_023712545::NZ_JAMAYA010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023712545::NZ_JAMAYA010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMAYA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span397 579-400 054 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
397 579 nt400 054 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M3689_RS01960GCF_023712545#M3689_RS01960
HKClassic
397 579-399 327 nt · Forward (+)
M3689_RS01965GCF_023712545#M3689_RS01965
RRLytTRCurrent focus
399 320-400 054 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000474275#A33I_RS11590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0807012
Simplified PFAM architecture for RROC_0807012
PFAM domain coverage: 206 / 244 aa (84.4%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-115] | LytTR[146-242]
- Domain count: 2
- Matched identifier: RROC_0807012
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; LytTR 146-242 ; LytTR 146-242
Cluster members and taxonomy
Representative gene: GCF_000474275#A33I_RS11590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_023712545
AssemblyASM2371254v1 · Contighaploid
Genome composition4 103 950 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 71 · HK 38 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key