1 Response_reg#1
8-117 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:8:1.94e-29:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS17185
Response regulator OmpR family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_022781285#MR568_RS17185Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:153:1.75e-27:229:77:77- Raw architecture: Response_reg:8:1.94e-29:117:111:111#Trans_reg_C:153:1.75e-27:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_022781285::NZ_JALETP010000236.1::G00052
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span56987-62744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_17290RefSeq proteinWP_276917216.1
Context group ID
GCF_022781285::NZ_JALETP010000236.1::G00052Context members
MR568_RS17185MR568_RS17190MR568_RS17195MR568_RS17200
Partner locus tags
MR568_RS17185MR568_RS17190MR568_RS17195MR568_RS17200
Partner old locus tags
MR568_17290MR568_17295MR568_17300MR568_17305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276917216.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS17185Primary locus identifier stored in the genes table.
Old locus tagMR568_17290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000236.1Sequence record reported by the local genomic context database.
Genomic interval56 987-57 685 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 987-62 744 ntGCF_022781285::NZ_JALETP010000236.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000236.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000236.1All displayed genes belong to this local TCS context.
Neighborhood span56 987-62 744 nt5 758 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 987 nt62 744 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
MR568_RS17185GCF_022781285#MR568_RS17185
RROmpRCurrent focus
56 987-57 685 nt · Reverse (-)
MR568_RS17190GCF_022781285#MR568_RS17190
HKClassic
57 669-59 264 nt · Reverse (-)
MR568_RS17195GCF_022781285#MR568_RS17195
RROmpR
59 282-59 983 nt · Reverse (-)
MR568_RS17200GCF_022781285#MR568_RS17200
HKClassic
60 021-62 744 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS17185The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1139944
Simplified PFAM architecture for RROC_1139944
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-117] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1139944
- Positioned domains: Response_reg 8-117 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS17185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key