1 HAMP#1
293-364 aa · 72 aa · 12.3% of protein
Raw token
HAMP:293:0.000000000000585:364:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS00515
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength583 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS00515Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length583 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 583 aa (41.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa583 aa
Domain-by-domain annotation3 items
2 His_kinase#2
381-451 aa · 71 aa · 12.2% of protein
Raw token
His_kinase:381:4.62e-25:451:71:803 HATPase_c#3
478-578 aa · 101 aa · 17.3% of protein
Raw token
HATPase_c:478:0.000000000000108:578:110:109- Raw architecture: HAMP:293:0.000000000000585:364:72:69#His_kinase:381:4.62e-25:451:71:80#HATPase_c:478:0.000000000000108:578:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000010.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3120-6097Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_00525RefSeq proteinWP_154465029.1
Context group ID
GCF_022781285::NZ_JALETP010000010.1::G00013Context members
MR568_RS00515MR568_RS00520
Partner locus tags
MR568_RS00515MR568_RS00520
Partner old locus tags
MR568_00525MR568_00530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154465029.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WF00Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WF00_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS00515Primary locus identifier stored in the genes table.
Old locus tagMR568_00525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000010.1Sequence record reported by the local genomic context database.
Genomic interval3 120-4 871 nt1 752 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 120-6 097 ntGCF_022781285::NZ_JALETP010000010.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000010.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000010.1All displayed genes belong to this local TCS context.
Neighborhood span3 120-6 097 nt2 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 120 nt6 097 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS00515GCF_022781285#MR568_RS00515
HKClassicCurrent focus
3 120-4 871 nt · Reverse (-)
MR568_RS00520GCF_022781285#MR568_RS00520
RRunclassified
4 868-6 097 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS13535Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1148949
Simplified PFAM architecture for HKOC_1148949
PFAM domain coverage: 227 / 583 aa (38.9%)
1 aa583 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-364] | His_kinase[381-453] | HATPase_c[478-577]
- Domain count: 3
- Matched identifier: HKOC_1148949
- Positioned domains: HAMP 311-364 ; His_kinase 381-453 ; HATPase_c 478-577
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS13535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key