1 dCache_1#1
49-286 aa · 238 aa · 35.4% of protein
Raw token
dCache_1:49:0.000000000000585:286:244:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS00700
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength673 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS00700Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length673 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage427 / 673 aa (63.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa673 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-465 aa · 80 aa · 11.9% of protein
Raw token
His_kinase:386:1.46e-33:465:80:803 HATPase_c#3
481-589 aa · 109 aa · 16.2% of protein
Raw token
HATPase_c:481:4.3e-19:589:112:109- Raw architecture: dCache_1:49:0.000000000000585:286:244:195#His_kinase:386:1.46e-33:465:80:80#HATPase_c:481:4.3e-19:589:112:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000011.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24418-28039Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_00710RefSeq proteinWP_276912829.1
Context group ID
GCF_022781285::NZ_JALETP010000011.1::G00031Context members
MR568_RS00695MR568_RS00700
Partner locus tags
MR568_RS00695MR568_RS00700
Partner old locus tags
MR568_00705MR568_00710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276912829.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS00700Primary locus identifier stored in the genes table.
Old locus tagMR568_00710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000011.1Sequence record reported by the local genomic context database.
Genomic interval26 018-28 039 nt2 022 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 418-28 039 ntGCF_022781285::NZ_JALETP010000011.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000011.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000011.1All displayed genes belong to this local TCS context.
Neighborhood span24 418-28 039 nt3 622 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 418 nt28 039 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS00695GCF_022781285#MR568_RS00695
RRunclassified
24 418-26 028 nt · Forward (+)
MR568_RS00700GCF_022781285#MR568_RS00700
HKClassicCurrent focus
26 018-28 039 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS00700The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0837581
Simplified PFAM architecture for HKOC_0837581
PFAM domain coverage: 422 / 673 aa (62.7%)
1 aa673 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[49-285] | His_kinase[387-465] | HATPase_c[482-587]
- Domain count: 3
- Matched identifier: HKOC_0837581
- Positioned domains: dCache_1 49-285 ; His_kinase 387-465 ; HATPase_c 482-587
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS00700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key